sevenbridges - Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.

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softwaredataimportthirdpartyclientapi-clientbioconductorbioinformaticscloudcommon-workflow-languagesevenbridges

7.48 score 37 stars 27 scripts 446 downloads

sevenbridges2 - The 'Seven Bridges Platform' API Client

R client and utilities for 'Seven Bridges Platform' API, from 'Cancer Genomics Cloud' to other 'Seven Bridges' supported platforms. API documentation is hosted publicly at <https://docs.sevenbridges.com/docs/the-api>.

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api-clientbioinformaticscloudsevenbridges

5.18 score 3 stars 5 scripts 205 downloads

tidycwl - Tidy Common Workflow Language Tools and Workflows

The Common Workflow Language <https://www.commonwl.org/> is an open standard for describing data analysis workflows. This package takes the raw Common Workflow Language workflows encoded in JSON or 'YAML' and turns the workflow elements into tidy data frames or lists. A graph representation for the workflow can be constructed and visualized with the parsed workflow inputs, outputs, and steps. Users can embed the visualizations in their 'Shiny' applications, and export them as HTML files or static images.

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bioinformatics-pipelinecommon-workflow-languagesevenbridgestidyverse

3.95 score 9 stars 223 downloads

biocompute - Create and Manipulate BioCompute Objects

Tools to create, validate, and export BioCompute Objects described in King et al. (2019) <doi:10.17605/osf.io/h59uh>. Users can encode information in data frames, and compose BioCompute Objects from the domains defined by the standard. A checksum validator and a JSON schema validator are provided. This package also supports exporting BioCompute Objects as JSON, PDF, HTML, or 'Word' documents, and exporting to cloud-based platforms.

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biocomputebiocompute-objectsbioinformaticsscience-communicationsevenbridgesstandardizationworkflow

3.77 score 3 stars 13 scripts 252 downloads