Package: sevenbridges2 0.4.0

Marko Trifunovic

sevenbridges2: The 'Seven Bridges Platform' API Client

R client and utilities for 'Seven Bridges Platform' API, from 'Cancer Genomics Cloud' to other 'Seven Bridges' supported platforms. API documentation is hosted publicly at <https://docs.sevenbridges.com/docs/the-api>.

Authors:Marko Trifunovic [aut, cre], Marija Gacic [aut], Vladimir Obucina [aut], Velsera [cph, fnd]

sevenbridges2_0.4.0.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
sevenbridges2/json (API)

# Install 'sevenbridges2' in R:
install.packages('sevenbridges2', repos = c('https://sbg.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sbg/sevenbridges2/issues

Pkgdown/docs site:https://sbg.github.io

On CRAN:

Conda:

api-clientbioinformaticscloudsevenbridges

5.18 score 3 stars 5 scripts 253 downloads 30 exports 60 dependencies

Last updated from:04c716e810. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK180
source / vignettesOK236
linux-releaseOK174
macos-releaseOK215
macos-oldrelOK265
windows-develOK134
windows-releaseOK143
windows-oldrelOK136
wasm-releaseOK116

Exports:apiAppAppsAsyncJobAuthBilling_groupsCollectionDivisionDivisionsExportExportsFileFilesImportImportsInvoicesPartprepare_items_for_bulk_exportprepare_items_for_bulk_importProjectsTaskTasksTeamTeamsUploadVolumeVolumeContentCollectionVolumeFileVolumePrefixVolumes

Dependencies:askpassbackportsbitbit64bootcellrangercheckmateclassclicliprcpp11crayoncurldata.tableDescToolse1071ExactexpmforcatsfsgldgluehavenhmshttrjsonlitelatticelifecyclelmommagrittrMASSMatrixmimemvtnormopensslpillarpkgconfigprettyunitsprogressproxypurrrR6RcppreadrreadxlrematchrlangrootSolverstudioapistringistringrsystibbletidyselecttzdbutf8vctrsvroomwithryaml

Authentication and Billing reference guide for Seven Bridges API R Client
Authentication | Direct authentication | Authentication via system environment variables | Authentication via user configuration file | API general information | Advance Access Features | Query Parameter fields | Rate Limits | General API error handlers | List All API Calls | Users | Billing Groups and Invoices | Billing groups | Invoices | Send a feedback item

Last update: 2025-03-25
Started: 2023-12-05

File upload and Volumes reference guide for Seven Bridges API R Client
File upload | Upload single file | Upload fields and operations | Print upload job | File size, part size and part number/length | Start upload | Get status information about the job | List all ongoing uploads | Abort upload process | Volumes | List volumes | Get single volume information | Create volumes - AWS (S3) using IAM User authentication type | Volume object operations | Update volume | Reload volume | List volume's content | Volume files and prefixes | Get VolumeFile info | Reload VolumeFile object | Get VolumePrefix info | List volume members | Remove members | Adding new members | Users with ADMIN privileges on divisions or enterprises | Modifying a member's permissions | Deactivate and reactivate the volume | Delete volume | Imports | List volume imports | Get a single import job | Get bulk import jobs | Submit new import - import a volume file into the project | Reload import job | Submit bulk import - import multiple volume files or folders into a project | Exports | List file exports to the volumes | Get a single export job | Get bulk export jobs | Submit a new export - export a file from the platform to a volume | Reload export job | Submit bulk export - export multiple files into a volume

Last update: 2025-03-25
Started: 2023-12-05

Introduction and Quickstart for Seven Bridges API R Client
Introduction | R Client for the Seven Bridges API | Installation | API General Information | Quickstart | Create Auth Object | Get User Information | Rate Limit | Show Billing Information | List and query projects | Create a new project | Get details of a specified project | Copy app into the project | Execute a new task | Find your app inputs | Prepare your input files | Create a new draft task | Preview your app's expected outputs | Run a Task | Run tasks using spot instances | Execution hints per task run | Draft a batch task

Last update: 2025-03-25
Started: 2023-12-18

Enterprise actions reference guide for Seven Bridges API R Client
Managing Divisions | List all your divisions | Get details of a division | List all your teams in a division | List members of a division | Remove a member from a division | Managing teams | Team object methods | Listing team members | Adding a member to a team | Removing a team member | Renaming a team | Deleting a team

Last update: 2025-03-25
Started: 2025-03-03

Projects, Files, Apps and Tasks execution with Seven Bridges API R Client
Projects | List all projects | Partial match project name | Filter by project creation date, modification date, and creator | Create a new project | Get a single project | Delete a project | Edit an existing project | Project members management | List project members | Add a member to a project | Get and modify a project member's permissions | Remove a project member | List project files | Create a folder within project Files | Get a project's root folder object | List project's apps, tasks and import jobs | Create a new app and task within a project | Files, folders and metadata | List files | List public data | Get a single file/folder | Delete a file | Asynchronous delete action on multiple files/folders | Copy files | Asynchronous bulk copy of multiple files | Get details of multiple files | Update details of multiple files | Edit details of multiple files | Get details of all asynchronous file jobs | Create a folder within the destination project or parent folder | Asynchronous bulk move of multiple files | File object operations | File print | Update file details | Add tags to a file | Copy a single file between projects | Get downloadable URL for a file | Get a file's metadata | Modify file metadata | List folder contents | Move a file into a folder | Download a file | Get a file's parent directory | Delete a file/folder | Delete multiple files/folders | Reload a file | Apps | List apps | List project apps | Get app information | Copy an app | Create new app | Create an app in a project | App object operations | Print an app | Get an app's raw CWL | Preview app's inputs and expected outputs | Get an app revision | Create an app revision | Sync a copied app | Reload an app | Tasks | List tasks | Get single task information | Get details of multiple tasks | Create a draft task | Create a batch task | Task operations | Print task | Run a task | Abort a task | Clone a task | Get execution details | List batch children | Update task | Rerun a task | Reload task | Delete task

Last update: 2025-03-25
Started: 2023-12-05

Readme and manuals

Help Manual

Help pageTopics
Core HTTP logic for Seven Bridges APIapi
R6 Class representing an appApp
R6 Class representing the apps endpointApps
R6 Class representing an AsyncJobAsyncJob
R6 Class Representing Authentication ObjectAuth
R6 Class representing billing information.Billing
R6 Class representing billing groups endpointsBilling_groups
R6 Class representing a Collection of objectsCollection
R6 Class representing a DivisionDivision
R6 Class representing divisions endpoints.Divisions
R6 Class representing an ExportExport
R6 Class representing storage exports endpointsExports
R6 Class representing a FileFile
R6 Class representing files endpoints.Files
R6 Class representing an Import jobImport
R6 Class representing storage imports endpointsImports
R6 Class representing invoice information.Invoice
R6 Class representing invoices endpointsInvoices
R6 Class Representing an ItemItem
R6 Class representing a project memberMember
R6 Class representing a part of the uploading filePart
R6 Class representing member's permissionsPermission
Prepare items for bulk exportprepare_items_for_bulk_export
Prepare items for bulk importprepare_items_for_bulk_import
R6 Class representing a project.Project
R6 Class representing projects endpoints.Projects
R6 Class Representing a Rate Limit for a userRate
R6 Class Representing a ResourceResource
R6 Class representing a TaskTask
R6 Class representing tasks endpointsTasks
R6 Class representing a TeamTeam
R6 Class representing teams endpointsTeams
R6 Class representing an Upload jobUpload
R6 Class Representing a platform UserUser
R6 Class representing a VolumeVolume
R6 Class representing a VolumeContentCollectionVolumeContentCollection
R6 Class representing a VolumeFileVolumeFile
R6 Class representing a VolumePrefixVolumePrefix
R6 Class representing volumes endpointsVolumes