Package: tidycwl 1.0.7

Soner Koc

tidycwl: Tidy Common Workflow Language Tools and Workflows

The Common Workflow Language <https://www.commonwl.org/> is an open standard for describing data analysis workflows. This package takes the raw Common Workflow Language workflows encoded in JSON or 'YAML' and turns the workflow elements into tidy data frames or lists. A graph representation for the workflow can be constructed and visualized with the parsed workflow inputs, outputs, and steps. Users can embed the visualizations in their 'Shiny' applications, and export them as HTML files or static images.

Authors:Soner Koc [aut, cre], Jeffrey Grover [aut], Nan Xiao [aut], Dennis Dean [aut], Seven Bridges Genomics [cph, fnd]

tidycwl_1.0.7.tar.gz
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tidycwl_1.0.7.tgz(r-4.4-any)tidycwl_1.0.7.tgz(r-4.3-any)
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tidycwl.pdf |tidycwl.html✨
tidycwl/json (API)
NEWS

# Install 'tidycwl' in R:
install.packages('tidycwl', repos = c('https://sbg.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/sbg/tidycwl/issues

On CRAN:

bioinformatics-pipelinecommon-workflow-languagesevenbridgestidyverse

3.95 score 9 stars 204 downloads 1 mentions 34 exports 43 dependencies

Last updated 6 months agofrom:8c1003ea80. Checks:ERROR: 7. Indexed: yes.

TargetResultDate
Doc / VignettesFAILNov 11 2024
R-4.5-winERRORNov 11 2024
R-4.5-linuxERRORNov 11 2024
R-4.4-winERRORNov 11 2024
R-4.4-macERRORNov 11 2024
R-4.3-winERRORNov 11 2024
R-4.3-macERRORNov 11 2024

Exports:%>%cwl_outputexport_htmlexport_imageget_cwl_versionget_edgesget_graphget_inputs_idget_inputs_labelget_nodesget_outputs_idget_outputs_labelget_steps_docget_steps_idget_steps_labelget_steps_revisionget_steps_versionis_cwlis_draft2is_toolis_v1.0is_v1.1is_workflowparse_cwlparse_inputsparse_metaparse_outputsparse_stepsparse_typeread_cwlread_cwl_jsonread_cwl_yamlrender_cwlvisualize_graph

Dependencies:base64encbslibcachemcallrclidigestdplyrevaluatefansifastmapfontawesomefsgenericsgluehighrhtmltoolshtmlwidgetsjquerylibjsonliteknitrlifecyclemagrittrmemoisemimepillarpkgconfigprocessxpsR6rappdirsrlangrmarkdownsasstibbletidyselecttinytexutf8vctrsvisNetworkwebshotwithrxfunyaml