Package: tidycwl 1.0.7

Soner Koc

tidycwl: Tidy Common Workflow Language Tools and Workflows

The Common Workflow Language <https://www.commonwl.org/> is an open standard for describing data analysis workflows. This package takes the raw Common Workflow Language workflows encoded in JSON or 'YAML' and turns the workflow elements into tidy data frames or lists. A graph representation for the workflow can be constructed and visualized with the parsed workflow inputs, outputs, and steps. Users can embed the visualizations in their 'Shiny' applications, and export them as HTML files or static images.

Authors:Soner Koc [aut, cre], Jeffrey Grover [aut], Nan Xiao [aut], Dennis Dean [aut], Seven Bridges Genomics [cph, fnd]

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tidycwl.pdf |tidycwl.html✨
tidycwl/json (API)
NEWS

# Install 'tidycwl' in R:
install.packages('tidycwl', repos = c('https://sbg.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sbg/tidycwl/issues

Pkgdown site:https://sbg.github.io

On CRAN:

bioinformatics-pipelinecommon-workflow-languagesevenbridgestidyverse

3.95 score 9 stars 181 downloads 1 mentions 34 exports 43 dependencies

Last updated 9 months agofrom:8c1003ea80. Checks:8 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesFAILFeb 09 2025
R-4.5-winERRORFeb 09 2025
R-4.5-macERRORFeb 09 2025
R-4.5-linuxERRORFeb 09 2025
R-4.4-winERRORFeb 09 2025
R-4.4-macERRORFeb 09 2025
R-4.3-winERRORFeb 09 2025
R-4.3-macERRORFeb 09 2025

Exports:%>%cwl_outputexport_htmlexport_imageget_cwl_versionget_edgesget_graphget_inputs_idget_inputs_labelget_nodesget_outputs_idget_outputs_labelget_steps_docget_steps_idget_steps_labelget_steps_revisionget_steps_versionis_cwlis_draft2is_toolis_v1.0is_v1.1is_workflowparse_cwlparse_inputsparse_metaparse_outputsparse_stepsparse_typeread_cwlread_cwl_jsonread_cwl_yamlrender_cwlvisualize_graph

Dependencies:base64encbslibcachemcallrclidigestdplyrevaluatefansifastmapfontawesomefsgenericsgluehighrhtmltoolshtmlwidgetsjquerylibjsonliteknitrlifecyclemagrittrmemoisemimepillarpkgconfigprocessxpsR6rappdirsrlangrmarkdownsasstibbletidyselecttinytexutf8vctrsvisNetworkwebshotwithrxfunyaml