{ "_id": "6ac37d9a7d74fca524f99b2c", "Package": "tidycwl", "Type": "Package", "Title": "Tidy Common Workflow Language Tools and Workflows", "Version": "1.0.7", "Authors@R": "c(\nperson(\"Soner\", \"Koc\", email = \"soner.koc@sevenbridges.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0772-6600\")),\nperson(\"Jeffrey\", \"Grover\", email = \"jeffrey.grover@sevenbridges.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0001-6246-1767\")),\nperson(\"Nan\", \"Xiao\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-0250-5673\")),\nperson(\"Dennis\", \"Dean\", email = \"dennis.dean@sevenbridges.com\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-7621-9717\")),\nperson(\"Seven Bridges Genomics\", role = c(\"cph\", \"fnd\"))\n)", "Maintainer": "Soner Koc ", "Description": "The Common Workflow Language \nis an open standard for describing data analysis workflows.\nThis package takes the raw Common Workflow Language workflows\nencoded in JSON or 'YAML' and turns the workflow elements into\ntidy data frames or lists. A graph representation for the\nworkflow can be constructed and visualized with the parsed\nworkflow inputs, outputs, and steps. Users can embed the\nvisualizations in their 'Shiny' applications, and export them\nas HTML files or static images.", "License": "AGPL-3", "SystemRequirements": "PhantomJS (https://phantomjs.org), pandoc (>=\n1.12.3) - https://pandoc.org.", "VignetteBuilder": "knitr", "URL": "https://sbg.github.io/tidycwl/, https://github.com/sbg/tidycwl", "BugReports": "https://github.com/sbg/tidycwl/issues", "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "Config/pak/sysreqs": "cmake make libmagick++-dev gsfonts libuv1-dev", "Repository": "https://sbg.r-universe.dev", "Date/Publication": "2024-05-31 20:55:25 UTC", "RemoteUrl": "https://github.com/sbg/tidycwl", "RemoteRef": "HEAD", "RemoteSha": "8c1003ea80a5ef3b4a76ae0a674d1c15588b62ec", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-05 10:33:12 UTC", "User": "root" }, "Author": "Soner Koc [aut, cre] (ORCID: ),\nJeffrey Grover [aut] (ORCID: ),\nNan Xiao [aut] (ORCID: ),\nDennis Dean [aut] (ORCID: ),\nSeven Bridges Genomics [cph, fnd]", "_user": 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"soner.koc@sevenbridges.com", "orcid": "0000-0002-0772-6600" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "jsonlite", "role": "Imports" }, { "package": "yaml", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "visNetwork", "role": "Imports" }, { "package": "htmlwidgets", "role": "Imports" }, { "package": "webshot", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "shiny", "role": "Suggests" } ], "_owner": "sbg", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "bioinformatics-pipeline", "common-workflow-language", "sevenbridges", "tidyverse" ], "_stars": 9, "_contributors": [ { "user": "nanxstats", "count": 44, "uuid": 199363 }, { "user": "groverj3", "count": 8, "uuid": 10768175 }, { "user": "seacevedo", "count": 8, "uuid": 24769333 } ], "_userbio": { "uuid": 233118, "type": "organization", "name": "Seven Bridges", "followers": 27 }, "_downloads": { "count": 312, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tidycwl" }, "_mentions": 1, "_devurl": "https://github.com/sbg/tidycwl", "_pkgdown": "https://sbg.github.io/tidycwl/", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/tidycwl.html" ], "_homeurl": "https://github.com/sbg/tidycwl", "_realowner": "sbg", "_cranurl": true, "_releases": [ { "version": "1.0.3", "date": "2019-11-28" }, { "version": "1.0.4", "date": "2019-12-07" }, { "version": "1.0.5", "date": "2020-10-20" }, { "version": "1.0.6", "date": "2021-12-15" }, { "version": "1.0.7", "date": "2022-05-03" } ], "_exports": [ "%>%", "cwl_output", "export_html", "export_image", "get_cwl_version", "get_edges", "get_graph", "get_inputs_id", "get_inputs_label", "get_nodes", "get_outputs_id", "get_outputs_label", "get_steps_doc", "get_steps_id", "get_steps_label", "get_steps_revision", "get_steps_version", "is_cwl", "is_draft2", "is_tool", "is_v1.0", "is_v1.1", "is_workflow", "parse_cwl", "parse_inputs", "parse_meta", "parse_outputs", "parse_steps", "parse_type", "read_cwl", "read_cwl_json", "read_cwl_yaml", "render_cwl", "visualize_graph" ], "_help": [ { "page": "export_html", "title": "Export the workflow plot as HTML", "topics": [ "export_html" ] }, { "page": "export_image", "title": "Export the workflow plot as PNG, JPEG, or PDF files", "topics": [ "export_image" ] }, { "page": "get_cwl_version", "title": "Get CWL version", "topics": [ "get_cwl_version" ] }, { "page": "get_edges", "title": "Get edges in a CWL workflow into a data frame", "topics": [ "get_edges" ] }, { "page": "get_graph", "title": "Get the CWL workflow graph", "topics": [ "get_graph" ] }, { "page": "get_inputs_id", "title": 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