{
  "_id": "6a1067d1acfb0bcc41ca9433",
  "Package": "tidycwl",
  "Type": "Package",
  "Title": "Tidy Common Workflow Language Tools and Workflows",
  "Version": "1.0.7",
  "Authors@R": "c(\nperson(\"Soner\", \"Koc\", email = \"soner.koc@sevenbridges.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0772-6600\")),\nperson(\"Jeffrey\", \"Grover\", email = \"jeffrey.grover@sevenbridges.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0001-6246-1767\")),\nperson(\"Nan\", \"Xiao\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-0250-5673\")),\nperson(\"Dennis\", \"Dean\", email = \"dennis.dean@sevenbridges.com\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-7621-9717\")),\nperson(\"Seven Bridges Genomics\", role = c(\"cph\", \"fnd\"))\n)",
  "Maintainer": "Soner Koc <soner.koc@sevenbridges.com>",
  "Description": "The Common Workflow Language <https://www.commonwl.org/>\nis an open standard for describing data analysis workflows.\nThis package takes the raw Common Workflow Language workflows\nencoded in JSON or 'YAML' and turns the workflow elements into\ntidy data frames or lists. A graph representation for the\nworkflow can be constructed and visualized with the parsed\nworkflow inputs, outputs, and steps. Users can embed the\nvisualizations in their 'Shiny' applications, and export them\nas HTML files or static images.",
  "License": "AGPL-3",
  "SystemRequirements": "PhantomJS (https://phantomjs.org), pandoc (>=\n1.12.3) - https://pandoc.org.",
  "VignetteBuilder": "knitr",
  "URL": "https://sbg.github.io/tidycwl/, https://github.com/sbg/tidycwl",
  "BugReports": "https://github.com/sbg/tidycwl/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.2",
  "Config/pak/sysreqs": "cmake make libmagick++-dev gsfonts libuv1-dev",
  "Repository": "https://sbg.r-universe.dev",
  "Date/Publication": "2024-05-31 20:55:25 UTC",
  "RemoteUrl": "https://github.com/sbg/tidycwl",
  "RemoteRef": "HEAD",
  "RemoteSha": "8c1003ea80a5ef3b4a76ae0a674d1c15588b62ec",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-08 05:28:32 UTC",
    "User": "root"
  },
  "Author": "Soner Koc [aut, cre] (ORCID: <https://orcid.org/0000-0002-0772-6600>),\nJeffrey Grover [aut] (ORCID: <https://orcid.org/0000-0001-6246-1767>),\nNan Xiao [aut] (ORCID: <https://orcid.org/0000-0002-0250-5673>),\nDennis Dean [aut] (ORCID: <https://orcid.org/0000-0002-7621-9717>),\nSeven Bridges Genomics [cph, fnd]",
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  "_user": "sbg",
  "_type": "src",
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  "_sha256": "a29274ae0470b4eaf72fca10d720f8f13403374674816d1d237daee5b09eeef8",
  "_created": "2026-05-08T05:28:32.000Z",
  "_published": "2026-05-22T14:27:29.271Z",
  "_distro": "noble",
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    "author": "Saul Acevedo <saul.acevedo@sbgenomics.com>",
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    },
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    }
  ],
  "_owner": "sbg",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "bioinformatics-pipeline",
    "common-workflow-language",
    "sevenbridges",
    "tidyverse"
  ],
  "_stars": 9,
  "_contributors": [
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tidycwl"
  },
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  "_devurl": "https://github.com/sbg/tidycwl",
  "_pkgdown": "https://sbg.github.io/tidycwl/",
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/tidycwl.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/sbg/tidycwl",
  "_realowner": "sbg",
  "_cranurl": true,
  "_releases": [
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      "date": "2019-11-28"
    },
    {
      "version": "1.0.4",
      "date": "2019-12-07"
    },
    {
      "version": "1.0.5",
      "date": "2020-10-20"
    },
    {
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      "date": "2021-12-15"
    },
    {
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      "date": "2022-05-03"
    }
  ],
  "_exports": [
    "%>%",
    "cwl_output",
    "export_html",
    "export_image",
    "get_cwl_version",
    "get_edges",
    "get_graph",
    "get_inputs_id",
    "get_inputs_label",
    "get_nodes",
    "get_outputs_id",
    "get_outputs_label",
    "get_steps_doc",
    "get_steps_id",
    "get_steps_label",
    "get_steps_revision",
    "get_steps_version",
    "is_cwl",
    "is_draft2",
    "is_tool",
    "is_v1.0",
    "is_v1.1",
    "is_workflow",
    "parse_cwl",
    "parse_inputs",
    "parse_meta",
    "parse_outputs",
    "parse_steps",
    "parse_type",
    "read_cwl",
    "read_cwl_json",
    "read_cwl_yaml",
    "render_cwl",
    "visualize_graph"
  ],
  "_help": [
    {
      "page": "export_html",
      "title": "Export the workflow plot as HTML",
      "topics": [
        "export_html"
      ]
    },
    {
      "page": "export_image",
      "title": "Export the workflow plot as PNG, JPEG, or PDF files",
      "topics": [
        "export_image"
      ]
    },
    {
      "page": "get_cwl_version",
      "title": "Get CWL version",
      "topics": [
        "get_cwl_version"
      ]
    },
    {
      "page": "get_edges",
      "title": "Get edges in a CWL workflow into a data frame",
      "topics": [
        "get_edges"
      ]
    },
    {
      "page": "get_graph",
      "title": "Get the CWL workflow graph",
      "topics": [
        "get_graph"
      ]
    },
    {
      "page": "get_inputs_id",
      "title": "Get ID for inputs",
      "topics": [
        "get_inputs_id"
      ]
    },
    {
      "page": "get_inputs_label",
      "title": "Get label for inputs",
      "topics": [
        "get_inputs_label"
      ]
    },
    {
      "page": "get_nodes",
      "title": "Get nodes in a CWL workflow into a data frame",
      "topics": [
        "get_nodes"
      ]
    },
    {
      "page": "get_outputs_id",
      "title": "Get ID for outputs",
      "topics": [
        "get_outputs_id"
      ]
    },
    {
      "page": "get_outputs_label",
      "title": "Get label for outputs",
      "topics": [
        "get_outputs_label"
      ]
    },
    {
      "page": "get_steps_doc",
      "title": "Get documentation/description for steps",
      "topics": [
        "get_steps_doc"
      ]
    },
    {
      "page": "get_steps_id",
      "title": "Get ID for steps",
      "topics": [
        "get_steps_id"
      ]
    },
    {
      "page": "get_steps_label",
      "title": "Get label for steps",
      "topics": [
        "get_steps_label"
      ]
    },
    {
      "page": "get_steps_revision",
      "title": "Get revision number for steps",
      "topics": [
        "get_steps_revision"
      ]
    },
    {
      "page": "get_steps_version",
      "title": "Get toolkit version for steps",
      "topics": [
        "get_steps_version"
      ]
    },
    {
      "page": "is_cwl",
      "title": "Is this a CWL object?",
      "topics": [
        "is_cwl"
      ]
    },
    {
      "page": "is_draft2",
      "title": "Is this CWL draft2?",
      "topics": [
        "is_draft2"
      ]
    },
    {
      "page": "is_tool",
      "title": "Is this a CWL command line tool?",
      "topics": [
        "is_tool"
      ]
    },
    {
      "page": "is_v1.0",
      "title": "Is this CWL v1.0?",
      "topics": [
        "is_v1.0"
      ]
    },
    {
      "page": "is_v1.1",
      "title": "Is this CWL v1.1?",
      "topics": [
        "is_v1.1"
      ]
    },
    {
      "page": "is_workflow",
      "title": "Is this a CWL workflow?",
      "topics": [
        "is_workflow"
      ]
    },
    {
      "page": "parse_cwl",
      "title": "Parse a CWL workflow",
      "topics": [
        "parse_cwl"
      ]
    },
    {
      "page": "parse_inputs",
      "title": "Parse the inputs of the CWL workflow into a data frame",
      "topics": [
        "parse_inputs"
      ]
    },
    {
      "page": "parse_meta",
      "title": "Parse the metadata in the CWL workflow",
      "topics": [
        "parse_meta"
      ]
    },
    {
      "page": "parse_outputs",
      "title": "Parse the outputs of the CWL workflow into a data frame",
      "topics": [
        "parse_outputs"
      ]
    },
    {
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      "title": "Parse the steps of the CWL workflow into a data frame",
      "topics": [
        "parse_steps"
      ]
    },
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      "title": "Parse CWL content type",
      "topics": [
        "parse_type"
      ]
    },
    {
      "page": "print.cwl",
      "title": "Print CWL objects",
      "topics": [
        "print.cwl"
      ]
    },
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      "title": "Shiny bindings for tidycwl",
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        "cwl_output",
        "render_cwl",
        "tidycwl_shiny"
      ]
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      "title": "Visualize the CWL workflow",
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      ]
    }
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