{
  "_id": "6acba5abfe5cc25786e91bc7",
  "Package": "biocompute",
  "Type": "Package",
  "Title": "Create and Manipulate BioCompute Objects",
  "Version": "1.1.1",
  "Authors@R": "c(\nperson(\"Soner\", \"Koc\", email = \"soner.koc@sevenbridges.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0772-6600\")),\nperson(\"Jeffrey\", \"Grover\", email = \"jeffrey.grover@sevenbridges.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0001-6246-1767\")),\nperson(\"Nan\", \"Xiao\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-0250-5673\")),\nperson(\"Dennis\", \"Dean\", email = \"dennis.dean@sevenbridges.com\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-7621-9717\")),\nperson(\"Seven Bridges Genomics\", role = c(\"cph\", \"fnd\"))\n)",
  "Maintainer": "Soner Koc <soner.koc@sevenbridges.com>",
  "Description": "Tools to create, validate, and export BioCompute Objects\ndescribed in King et al. (2019) <doi:10.17605/osf.io/h59uh>.\nUsers can encode information in data frames, and compose\nBioCompute Objects from the domains defined by the standard. A\nchecksum validator and a JSON schema validator are provided.\nThis package also supports exporting BioCompute Objects as\nJSON, PDF, HTML, or 'Word' documents, and exporting to\ncloud-based platforms.",
  "License": "AGPL-3",
  "VignetteBuilder": "knitr",
  "URL": "https://sbg.github.io/biocompute/,\nhttps://github.com/sbg/biocompute",
  "BugReports": "https://github.com/sbg/biocompute/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.2",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nlibnode-dev",
  "Repository": "https://sbg.r-universe.dev",
  "Date/Publication": "2024-06-06 15:19:11 UTC",
  "RemoteUrl": "https://github.com/sbg/biocompute",
  "RemoteRef": "HEAD",
  "RemoteSha": "a7afdada6a2273c7dbe9b5fc5266287638c3573b",
  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
  },
  "Author": "Soner Koc [aut, cre] (ORCID: <https://orcid.org/0000-0002-0772-6600>),\nJeffrey Grover [aut] (ORCID: <https://orcid.org/0000-0001-6246-1767>),\nNan Xiao [aut] (ORCID: <https://orcid.org/0000-0002-0250-5673>),\nDennis Dean [aut] (ORCID: <https://orcid.org/0000-0002-7621-9717>),\nSeven Bridges Genomics [cph, fnd]",
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  "_type": "src",
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  "_sha256": "5be2ce4f33dd0c0f1ae24bf1c4fff1485dd7dadd1d19fc2d79f1797a8926a73f",
  "_expires": "2027-01-19T15:05:13.000Z",
  "_created": "2026-10-11T15:02:13.000Z",
  "_published": "2026-10-11T15:05:15.795Z",
  "_buildurl": "https://github.com/r-universe/sbg/actions/runs/38149415312",
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  "_host": "GitHub-Actions",
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      "role": "Imports"
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      "role": "Imports"
    },
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    },
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  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
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    "biocompute-objects",
    "bioinformatics",
    "science-communication",
    "sevenbridges",
    "standardization",
    "workflow"
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    "type": "organization",
    "name": "Seven Bridges",
    "followers": 27
  },
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/biocompute"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/sbg/biocompute",
  "_pkgdown": "https://sbg.github.io/biocompute/",
  "_searchresults": 13,
  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/sbg/biocompute",
  "_realowner": "sbg",
  "_cranurl": true,
  "_releases": [
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      "date": "2019-11-28"
    },
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      "date": "2020-10-16"
    },
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    },
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      "date": "2021-10-21"
    },
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      "date": "2022-05-03"
    }
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    "%>%",
    "compose",
    "compose_description",
    "compose_description_v1.4.2",
    "compose_error",
    "compose_error_v1.4.2",
    "compose_execution",
    "compose_execution_v1.4.2",
    "compose_extension",
    "compose_extension_v1.4.2",
    "compose_fhir",
    "compose_fhir_v1.4.2",
    "compose_io",
    "compose_io_v1.4.2",
    "compose_parametric",
    "compose_parametric_v1.4.2",
    "compose_provenance",
    "compose_provenance_v1.4.2",
    "compose_scm",
    "compose_scm_v1.4.2",
    "compose_tlf",
    "compose_tlf_v1.4.2",
    "compose_usability",
    "compose_usability_v1.4.2",
    "compose_v1.4.2",
    "convert_json",
    "convert_yaml",
    "export_html",
    "export_json",
    "export_pdf",
    "export_sevenbridges",
    "export_word",
    "generate_example",
    "generate_id",
    "is_bco",
    "is_domain",
    "read_bco",
    "validate_checksum",
    "validate_checksum_v1.4.2",
    "validate_schema",
    "validate_schema_v1.4.2",
    "versions"
  ],
  "_help": [
    {
      "page": "compose_description",
      "title": "Compose BioCompute Object - Description Domain (v1.4.2)",
      "topics": [
        "compose_description",
        "compose_description_v1.4.2"
      ]
    },
    {
      "page": "compose_error",
      "title": "Compose BioCompute Object - Error Domain (v1.4.2)",
      "topics": [
        "compose_error",
        "compose_error_v1.4.2"
      ]
    },
    {
      "page": "compose_execution",
      "title": "Compose BioCompute Object - Execution Domain (v1.4.2)",
      "topics": [
        "compose_execution",
        "compose_execution_v1.4.2"
      ]
    },
    {
      "page": "compose_extension",
      "title": "Compose BioCompute Object - Extension Domain (v1.4.2)",
      "topics": [
        "compose_extension",
        "compose_extension_v1.4.2"
      ]
    },
    {
      "page": "compose_fhir",
      "title": "Compose BioCompute Object - FHIR Extension (v1.4.2)",
      "topics": [
        "compose_fhir",
        "compose_fhir_v1.4.2"
      ]
    },
    {
      "page": "compose_io",
      "title": "Compose BioCompute Object - Input and Output Domain (v1.4.2)",
      "topics": [
        "compose_io",
        "compose_io_v1.4.2"
      ]
    },
    {
      "page": "compose_parametric",
      "title": "Compose BioCompute Object - Parametric Domain (v1.4.2)",
      "topics": [
        "compose_parametric",
        "compose_parametric_v1.4.2"
      ]
    },
    {
      "page": "compose_provenance",
      "title": "Compose BioCompute Object - Provenance Domain (v1.4.2)",
      "topics": [
        "compose_provenance",
        "compose_provenance_v1.4.2"
      ]
    },
    {
      "page": "compose_scm",
      "title": "Compose BioCompute Object - SCM Extension (v1.4.2)",
      "topics": [
        "compose_scm",
        "compose_scm_v1.4.2"
      ]
    },
    {
      "page": "compose_tlf",
      "title": "Compose BioCompute Object - Top Level Fields (v1.4.2)",
      "topics": [
        "compose_tlf",
        "compose_tlf_v1.4.2"
      ]
    },
    {
      "page": "compose_usability",
      "title": "Compose BioCompute Object - Usability Domain (v1.4.2)",
      "topics": [
        "compose_usability",
        "compose_usability_v1.4.2"
      ]
    },
    {
      "page": "compose",
      "title": "Compose BioCompute Object (v1.4.2)",
      "topics": [
        "compose",
        "compose_v1.4.2"
      ]
    },
    {
      "page": "convert_json",
      "title": "Convert BioCompute Object or domain to JSON string",
      "topics": [
        "convert_json"
      ]
    },
    {
      "page": "convert_yaml",
      "title": "Convert BioCompute Object or domain to YAML string",
      "topics": [
        "convert_yaml"
      ]
    },
    {
      "page": "export_html",
      "title": "Export BioCompute Object as HTML",
      "topics": [
        "export_html"
      ]
    },
    {
      "page": "export_json",
      "title": "Export BioCompute Object as JSON",
      "topics": [
        "export_json"
      ]
    },
    {
      "page": "export_pdf",
      "title": "Export BioCompute Object as PDF",
      "topics": [
        "export_pdf"
      ]
    },
    {
      "page": "export_sevenbridges",
      "title": "Export BioCompute Object to Seven Bridges Platforms",
      "topics": [
        "export_sevenbridges"
      ]
    },
    {
      "page": "export_word",
      "title": "Export BioCompute Object as Word document",
      "topics": [
        "export_word"
      ]
    },
    {
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      "title": "Generate example BioCompute Objects",
      "topics": [
        "generate_example"
      ]
    },
    {
      "page": "generate_id",
      "title": "Generate ID for the BioCompute Object",
      "topics": [
        "generate_id"
      ]
    },
    {
      "page": "is_bco",
      "title": "Is this a BCO object?",
      "topics": [
        "is_bco"
      ]
    },
    {
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      "title": "Is this a domain object?",
      "topics": [
        "is_domain"
      ]
    },
    {
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      "title": "Parse Biocompute Object From JSON File to R Object",
      "topics": [
        "read_bco"
      ]
    },
    {
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      "title": "BioCompute Objects checksum validator (v1.4.2)",
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        "validate_checksum_v1.4.2"
      ]
    },
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      "topics": [
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        "validate_schema_v1.4.2"
      ]
    },
    {
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      "title": "BioCompute Object specification versions",
      "topics": [
        "versions"
      ]
    }
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